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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jonathan Kober | 5th | Eduardo Lopez | 6th | 3rd |
| First Basemen | Noel Cusack | 17th | Zach Weakley | 10th | 15th |
| Second Basemen | Dusty Ward | 6th | Tied for 22nd | 22nd | |
| Third Basemen | Kyle Nash | 15th | Kyle Nash | Tied for 7th | 12th |
| Shortstops | Adam Bechdel | 17th | Bobby Uribe | 16th | 17th |
| Left Fielders | Ben Bohannon | 24th | Steve Nalbach | 17th | 21st |
| Center Fielders | Raul Arreola | 18th | Vinny Torres | Tied for 16th | 19th |
| Right Fielders | Willie Villegas | Tied for 9th | Michael Nava | 2nd | 7th |
| Starting Pitchers | James Dobyns | 8th | 24th | 23rd | |
| Relievers | Keith Hawes | 14th | Shane Edwards | 22nd | 20th |
| Closers | Keith Hawes | 19th | Shane Edwards | Tied for 11th | 11th |
