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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jonathan Kober | 5th | Eduardo Lopez | 17th | 16th |
| First Basemen | Noel Cusack | 19th | Zach Weakley | 4th | 14th |
| Second Basemen | Dusty Ward | 4th | Jason Clare | Tied for 13th | 6th |
| Third Basemen | Jeff Mullinax | 23rd | Kyle Nash | Tied for 9th | 14th |
| Shortstops | Jared Priest | 15th | Bobby Uribe | 11th | 14th |
| Left Fielders | Dan Brewer | 19th | Danny Haessly | Tied for 15th | 17th |
| Center Fielders | Raul Arreola | 16th | Tied for 19th | 20th | |
| Right Fielders | Willie Villegas | 14th | Michael Nava | 6th | 8th |
| Starting Pitchers | James Dobyns | 13th | Kyle Griffin | 23rd | 23rd |
| Relievers | Keith Hawes | 9th | Jon Messer | 16th | 13th |
| Closers | Andy Hannah | 24th | Jon Messer | 4th | 15th |
