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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Franklin Reyes | 8th | Jonathan Kober | Tied for 15th | 7th |
| First Basemen | Noel Cusack | 20th | Zach Weakley | 6th | 16th |
| Second Basemen | Dusty Ward | 6th | Jason Clare | 19th | 19th |
| Third Basemen | Matthew Little | 22nd | Kyle Nash | 18th | 19th |
| Shortstops | Willie Alvarez | 18th | Bobby Uribe | 12th | 14th |
| Left Fielders | Dan Brewer | 18th | Ron Salcido | 23rd | 23rd |
| Center Fielders | Raul Arreola | 16th | Tied for 20th | 20th | |
| Right Fielders | Willie Villegas | 18th | Felix Mora | 6th | 11th |
| Starting Pitchers | James Dobyns | 11th | Chris Pokorski | 24th | 23rd |
| Relievers | Keith Hawes | 11th | Jason Ginty | 24th | 17th |
| Closers | Adam Holland | 8th | Jon Messer | 20th | 18th |
