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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Xavier Cyprian | 5th | Tied for 1st | 5th | |
| First Basemen | Cory Magliaro | 12th | Tied for 1st | 12th | |
| Second Basemen | Jay Arellano | 25th | Tied for 1st | 25th | |
| Third Basemen | Brett Meade | 1st | Tied for 1st | 1st | |
| Shortstops | Garrett Pikulski | Tied for 36th | Tied for 1st | Tied for 36th | |
| Left Fielders | Alex Verduzco | 30th | Tied for 1st | 30th | |
| Center Fielders | Travis Chavez | 19th | Tied for 1st | 19th | |
| Right Fielders | Matt Willis | 6th | Tied for 1st | 6th | |
| Starting Pitchers | Matt Toren | 15th | Tied for 1st | 15th | |
| Relievers | Joe Hunter | Tied for 28th | Tied for 1st | Tied for 28th | |
| Closers | Hans Keahey | 45th | Tied for 1st | 45th |
