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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Neil Wetzel | Tied for 36th | Tied for 1st | Tied for 36th | |
| First Basemen | Ramiro Pastor | Tied for 31st | Tied for 1st | Tied for 31st | |
| Second Basemen | Dusty Pierce | 59th | Tied for 1st | 59th | |
| Third Basemen | Matt Parker | 21st | Tied for 1st | 21st | |
| Shortstops | Steve Bloomquist | 1st | Tied for 1st | 1st | |
| Left Fielders | Jose Martinez | 44th | Tied for 1st | 44th | |
| Center Fielders | Andy Barnes | 49th | Tied for 1st | 49th | |
| Right Fielders | Josh Janitz | Tied for 54th | Tied for 1st | Tied for 54th | |
| Starting Pitchers | Willie Hernandez | 54th | Tied for 1st | 54th | |
| Relievers | Jesse Sherman | 12th | Tied for 1st | 12th | |
| Closers | Ryan McEntyre | 6th | Tied for 1st | 6th |
