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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | John Werlin | 12th | Ben Everly | 1st | 3rd |
| First Basemen | Juan Ortiz | 2nd | Michel DeRise | 18th | 2nd |
| Second Basemen | Dusty Anderson | 11th | Justin Teehan | 13th | 10th |
| Third Basemen | Lance Parrent | 19th | Lance Parrent | Tied for 10th | 13th |
| Shortstops | Charlie Paquin | 6th | Jim Henkemeyer | 1st | 2nd |
| Left Fielders | Nelson Ziersch | 1st | Bobby Barnes | 2nd | 1st |
| Center Fielders | Nick Wisniewski | 8th | Isaiah Goulbourne | 6th | 5th |
| Right Fielders | Josh Botello | 12th | John Hall | 2nd | 8th |
| Starting Pitchers | Andy Weatherholt | 5th | Omar Cons | 1st | 3rd |
| Relievers | Jon Reynolds | 2nd | Jeremy Ferraro | 3rd | 2nd |
| Closers | Jon Reynolds | 3rd | Gregg Daugherty | 10th | 3rd |
