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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | John Werlin | 7th | Ben Everly | 1st | 1st |
| First Basemen | Juan Ortiz | 4th | George Kinder | 6th | 2nd |
| Second Basemen | Dusty Anderson | 9th | Justin Teehan | Tied for 13th | 9th |
| Third Basemen | Ryan Forsythe | 2nd | Francisco Mendez | 19th | 16th |
| Shortstops | Charlie Paquin | 7th | Dan Canady | 4th | 4th |
| Left Fielders | Nelson Ziersch | 1st | Oscar de Leon | 6th | 1st |
| Center Fielders | Nick Wisniewski | 8th | Isaiah Goulbourne | 15th | 15th |
| Right Fielders | 22nd | Jim Henkemeyer | 2nd | 21st | |
| Starting Pitchers | Andy Weatherholt | 5th | Cody Fields | 1st | 4th |
| Relievers | Jon Reynolds | 2nd | Jeremy Ferraro | 5th | 1st |
| Closers | Jon Reynolds | 4th | Gregg Daugherty | 9th | 4th |
