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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Franklin Reyes | 13th | Alex Clinkenbeard | 13th | 11th |
| First Basemen | Bobby Phillips | 17th | Mike Chaloux | 5th | 16th |
| Second Basemen | Bill Havey | 18th | 22nd | 23rd | |
| Third Basemen | Jose Lazaro | 8th | Tamiela Kalolo | 3rd | 3rd |
| Shortstops | 24th | Tied for 18th | 24th | ||
| Left Fielders | Mike Green | 6th | Mike Fearing | 19th | 8th |
| Center Fielders | Blake Benigno | 16th | 19th | 19th | |
| Right Fielders | Todd Korn | 20th | Jimmy Kronenberger | 6th | 13th |
| Starting Pitchers | Rob Griffin | 7th | Jimmy DeMoss | 18th | 8th |
| Relievers | Vinny Narvaez | 14th | Ben Foster | 13th | 11th |
| Closers | Jerrod Notaro | 24th | Ben Foster | 1st | 12th |
