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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Scott Stueve | 28th | Tied for 1st | 28th | |
| First Basemen | Johnny Vandiver | 31st | Tied for 1st | 31st | |
| Second Basemen | Brian Byrnes | 36th | Tied for 1st | 36th | |
| Third Basemen | Justin Burson | 43rd | Tied for 1st | 43rd | |
| Shortstops | Michael Bassett | Tied for 35th | Tied for 1st | Tied for 35th | |
| Left Fielders | Nelson Vargas | 56th | Tied for 1st | 56th | |
| Center Fielders | Glen Eastman | 37th | Tied for 1st | 37th | |
| Right Fielders | Nick Wunderlich | 32nd | Tied for 1st | 32nd | |
| Starting Pitchers | Allan Clemente | 8th | Tied for 1st | 8th | |
| Relievers | Brad Krapohl | 17th | Tied for 1st | 17th | |
| Closers | Sean Moss | 39th | Tied for 1st | 39th |
