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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jim Van Donsel | 5th | Ryan Freeman | 3rd | 4th |
| First Basemen | T.J. Walker | 14th | Jose Ramos | 2nd | 10th |
| Second Basemen | Henry Cortez | 11th | Justin Perez | 22nd | 21st |
| Third Basemen | Victor Mendez | 7th | Scott Goldfein | Tied for 3rd | 5th |
| Shortstops | Mike Dallis | 19th | Tied for 21st | 22nd | |
| Left Fielders | Jerry Robinson | 9th | Paul Dankenbring | 16th | 10th |
| Center Fielders | Adam McCumiskey | 17th | Matthew Brown | Tied for 7th | 14th |
| Right Fielders | Tony Bradshaw | 10th | Nate Jurgensen | 18th | 16th |
| Starting Pitchers | John Hennig | 10th | Danny Orfila | 5th | 6th |
| Relievers | James Gibson | 22nd | Micah Weidner | 17th | 22nd |
| Closers | Greg Camarillo | 15th | Jonathan Bruckert | 6th | 9th |
