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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jim Van Donsel | 3rd | Ryan Freeman | 4th | 3rd |
| First Basemen | T.J. Walker | 13th | Jose Ramos | Tied for 1st | 11th |
| Second Basemen | Henry Cortez | 8th | Justin Perez | 22nd | 21st |
| Third Basemen | Victor Mendez | 9th | Scott Goldfein | 17th | 15th |
| Shortstops | Mike Dallis | 19th | Tied for 21st | 22nd | |
| Left Fielders | Jerry Robinson | 7th | Paul Dankenbring | 16th | 6th |
| Center Fielders | Adam McCumiskey | Tied for 16th | Matthew Brown | 16th | 18th |
| Right Fielders | Tony Bradshaw | 11th | Tony Bradshaw | 10th | 9th |
| Starting Pitchers | John Hennig | 10th | Danny Orfila | 5th | 7th |
| Relievers | James Gibson | 21st | Micah Weidner | 17th | 22nd |
| Closers | Greg Camarillo | 10th | Edward Ness | 7th | 9th |
