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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Mike Pierskalla | 11th | Jamal Martin | 15th | 15th |
| First Basemen | Eric Daniel | 3rd | George Theodore | 3rd | 3rd |
| Second Basemen | Paul Ainsworth | 6th | Nate Cobb | Tied for 10th | 6th |
| Third Basemen | Elijah Moody | 3rd | Trent Lovoi | Tied for 7th | 2nd |
| Shortstops | Roy Blaylock | 17th | Victor Cruz | 6th | 14th |
| Left Fielders | Tim Schellin | 15th | Andy Rael | 10th | 12th |
| Center Fielders | Takenori Murayama | 16th | Eric Lilienthal | 15th | 17th |
| Right Fielders | Tom Klenke | 15th | Jesus Escobar | 21st | 18th |
| Starting Pitchers | Logan Mayhew | 19th | Jose Paredes | 14th | 17th |
| Relievers | Pat Eisen | 14th | Jon Ramirez | 14th | 12th |
| Closers | Pat Eisen | 19th | Kyle Thompson | Tied for 12th | 16th |
