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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Mike Pierskalla | 8th | Jamal Martin | Tied for 13th | 10th |
| First Basemen | Eric Daniel | 3rd | George Theodore | 7th | 3rd |
| Second Basemen | Paul Ainsworth | 6th | Nate Cobb | 14th | 7th |
| Third Basemen | Elijah Moody | 4th | Trent Lovoi | 3rd | 1st |
| Shortstops | Roy Blaylock | 20th | Victor Cruz | 7th | 14th |
| Left Fielders | Tim Schellin | 19th | Andy Rael | 8th | 15th |
| Center Fielders | Takenori Murayama | 17th | Eric Lilienthal | 15th | 18th |
| Right Fielders | Tom Klenke | 15th | Jesus Escobar | 22nd | 20th |
| Starting Pitchers | Logan Mayhew | 19th | Jose Paredes | 14th | 17th |
| Relievers | Pat Eisen | 20th | Jon Ramirez | 8th | 11th |
| Closers | Pat Eisen | 19th | Kyle Thompson | 12th | 12th |
