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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | J.R. Daniels | 12th | Josh Mahan | 3rd | 8th |
| First Basemen | Chris Dietel | 13th | Mike Fitzgerald | 24th | 23rd |
| Second Basemen | David McGowan | 8th | Sean Welliver | Tied for 11th | 8th |
| Third Basemen | Tied for 22nd | Tied for 21st | 24th | ||
| Shortstops | Jeff Yule | 7th | Raul Rodriguez | 11th | 8th |
| Left Fielders | Corey Pope | 1st | Rob Lindauer | 23rd | 22nd |
| Center Fielders | Isaiah Mill | 4th | Jason Perrigin | 1st | 3rd |
| Right Fielders | Chris Epstein | 17th | Luis Amador | 20th | 19th |
| Starting Pitchers | Taylor Motyl | 21st | Tarjei Wiese | 12th | 19th |
| Relievers | Dan Mills | 15th | Tim Peters | 7th | 8th |
| Closers | Wade McGonigle | 5th | Jonathan Reeher | Tied for 13th | 3rd |
