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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | John Phelan | 15th | Dustin Downing | 2nd | 11th |
| First Basemen | Jason Moore | 9th | Maurice Patterson | 24th | 15th |
| Second Basemen | Mike Lynn | 17th | Sean Dowling | 14th | 15th |
| Third Basemen | Bobby Oliver | 11th | T.J. Donovan | 7th | 9th |
| Shortstops | Mel Hernandez | 6th | Jose Valverde | 5th | 6th |
| Left Fielders | Mike Melin | 10th | Tobias Rivera | 23rd | 13th |
| Center Fielders | Tony Ochoa | 8th | Jay McBurney | 4th | 7th |
| Right Fielders | Salvador Morales | 14th | Julio Negron | 19th | 18th |
| Starting Pitchers | Gerardo Cruz | 10th | Matt Graham | 1st | 7th |
| Relievers | Lorenzo Andrade | 10th | Brent Stedronsky | 1st | 8th |
| Closers | Dan Mills | 15th | Tim Kondas | 11th | 13th |
